Package: zoolog 1.1.1.001

zoolog: Zooarchaeological Analysis with Log-Ratios

Includes functions and reference data to generate and manipulate log-ratios (also known as log size index (LSI) values) from measurements obtained on zooarchaeological material. Log ratios are used to compare the relative (rather than the absolute) dimensions of animals from archaeological contexts (Meadow 1999, ISBN: 9783896463883). zoolog is also able to seamlessly integrate data and references with heterogeneous nomenclature, which is internally managed by a zoolog thesaurus. A preliminary version of the zoolog methods was first used by Trentacoste, Nieto-Espinet, and Valenzuela-Lamas (2018) <doi:10.1371/journal.pone.0208109>.

Authors:Jose M Pozo [aut, cre], Angela Trentacoste [aut], Ariadna Nieto-Espinet [aut], Silvia GuimarĂ£es Chiarelli [aut], Silvia Valenzuela-Lamas [aut]

zoolog_1.1.1.001.tar.gz
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zoolog.pdf |zoolog.html
zoolog/json (API)
NEWS

# Install 'zoolog' in R:
install.packages('zoolog', repos = c('https://josempozo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/josempozo/zoolog/issues

Datasets:

On CRAN:

18 exports 6 stars 1.26 score 3 dependencies 4 scripts 217 downloads

Last updated 2 years agofrom:a7a340a4bf. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 12 2024
R-4.5-winOKSep 12 2024
R-4.5-linuxOKSep 12 2024
R-4.4-winOKSep 12 2024
R-4.4-macOKSep 12 2024
R-4.3-winOKSep 12 2024
R-4.3-macOKSep 12 2024

Exports:AddToThesaurusAssembleReferenceCondenseLogsGetSpeciesInInCategoryLogRatiosNewThesaurusReadThesaurusReadThesaurusSetRemoveNACasesRemoveRepeatedNamesStandardizeDataSetStandardizeNomenclatureSubtaxonomySubtaxonomySetThesaurusAmbiguityWriteThesaurusWriteThesaurusSet

Dependencies:rbibutilsRdpackstringi

zoolog: Zooarchaeological Analysis with Log-Ratios

Rendered fromindex.Rmdusingknitr::rmarkdownon Sep 12 2024.

Last update: 2022-08-22
Started: 2021-01-19

Readme and manuals

Help Manual

Help pageTopics
Assemble ReferenceAssembleReference
Condense Measure Log-RatiosCondenseLogs
Example datasetdataValenzuelaLamas2008
Value Matching by Thesaurus CategoryInCategory
Log Ratios of MeasurementsLogRatios
Referencesreference referencesDatabase referenceSets
Remove Cases Missing All MeasurementsRemoveNACases
Standardize NomenclatureStandardizeDataSet StandardizeNomenclature
Subtaxonomy under taxonomical categoryGetSpeciesIn Subtaxonomy SubtaxonomySet
Thesaurus ManagementAddToThesaurus NewThesaurus RemoveRepeatedNames ThesaurusAmbiguity ThesaurusManagement
Thesaurus Readers and WritersReadThesaurus ReadThesaurusSet ThesaurusReaderWriter WriteThesaurus WriteThesaurusSet
Taxonomy hierarchy for 'zoolog'zoologTaxonomy
Thesaurus Set for 'zoolog'zoologThesaurus