Package: zoolog 1.1.1.001
zoolog: Zooarchaeological Analysis with Log-Ratios
Includes functions and reference data to generate and manipulate log-ratios (also known as log size index (LSI) values) from measurements obtained on zooarchaeological material. Log ratios are used to compare the relative (rather than the absolute) dimensions of animals from archaeological contexts (Meadow 1999, ISBN: 9783896463883). zoolog is also able to seamlessly integrate data and references with heterogeneous nomenclature, which is internally managed by a zoolog thesaurus. A preliminary version of the zoolog methods was first used by Trentacoste, Nieto-Espinet, and Valenzuela-Lamas (2018) <doi:10.1371/journal.pone.0208109>.
Authors:
zoolog_1.1.1.001.tar.gz
zoolog_1.1.1.001.zip(r-4.5)zoolog_1.1.1.001.zip(r-4.4)zoolog_1.1.1.001.zip(r-4.3)
zoolog_1.1.1.001.tgz(r-4.4-any)zoolog_1.1.1.001.tgz(r-4.3-any)
zoolog_1.1.1.001.tar.gz(r-4.5-noble)zoolog_1.1.1.001.tar.gz(r-4.4-noble)
zoolog_1.1.1.001.tgz(r-4.4-emscripten)zoolog_1.1.1.001.tgz(r-4.3-emscripten)
zoolog.pdf |zoolog.html✨
zoolog/json (API)
NEWS
| # Install 'zoolog' in R: |
| install.packages('zoolog', repos = c('https://josempozo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/josempozo/zoolog/issues
- reference - References
- referenceSets - References
- referencesDatabase - References
- zoologTaxonomy - Taxonomy hierarchy for 'zoolog'
- zoologThesaurus - Thesaurus Set for 'zoolog'
Last updated 2 years agofrom:a7a340a4bf. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 11 2024 |
| R-4.5-win | OK | Nov 11 2024 |
| R-4.5-linux | OK | Nov 11 2024 |
| R-4.4-win | OK | Nov 11 2024 |
| R-4.4-mac | OK | Nov 11 2024 |
| R-4.3-win | OK | Nov 11 2024 |
| R-4.3-mac | OK | Nov 11 2024 |
Exports:AddToThesaurusAssembleReferenceCondenseLogsGetSpeciesInInCategoryLogRatiosNewThesaurusReadThesaurusReadThesaurusSetRemoveNACasesRemoveRepeatedNamesStandardizeDataSetStandardizeNomenclatureSubtaxonomySubtaxonomySetThesaurusAmbiguityWriteThesaurusWriteThesaurusSet
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Assemble Reference | AssembleReference |
| Condense Measure Log-Ratios | CondenseLogs |
| Example dataset | dataValenzuelaLamas2008 |
| Value Matching by Thesaurus Category | InCategory |
| Log Ratios of Measurements | LogRatios |
| References | reference referencesDatabase referenceSets |
| Remove Cases Missing All Measurements | RemoveNACases |
| Standardize Nomenclature | StandardizeDataSet StandardizeNomenclature |
| Subtaxonomy under taxonomical category | GetSpeciesIn Subtaxonomy SubtaxonomySet |
| Thesaurus Management | AddToThesaurus NewThesaurus RemoveRepeatedNames ThesaurusAmbiguity ThesaurusManagement |
| Thesaurus Readers and Writers | ReadThesaurus ReadThesaurusSet ThesaurusReaderWriter WriteThesaurus WriteThesaurusSet |
| Taxonomy hierarchy for 'zoolog' | zoologTaxonomy |
| Thesaurus Set for 'zoolog' | zoologThesaurus |
